Pdf of lecture notes

Links for Biochem623, March 14th 2008, guest lecture Karsten Theis

• Firstglance in Jmol
• Electron density server (only if raw data available)

  • Download density
  • How well do atoms fit to map?
  • Many other aspects
• What if? (you can upload your own coordinates)

  • Crystal contacts to 5 Å distance
  • Atomic clashes
• Helixweb, NIH
• B-factor plot

Structures

1ARO, X-ray, 2.80 Å,     P=1-883.
1CEZ, X-ray, 2.40 Å,     A=1-883.
1H38,  X-ray, 2.90 Å,     A/B/C/D=1-883.
1MSW, X-ray, 2.10 Å,     D=1-883.
1QLN,    X-ray, 2.40 Å,     A=1-883.
1S0V,     X-ray, 3.20 Å,     A/B/C/D=1-883.
1S76,     X-ray, 2.88 Å,     D=1-883.
1S77,     X-ray, 2.69 Å,     D=1-883.
2PI4,      X-ray, 2.50 Å,     A=6-883.
2PI5,      X-ray, 2.90 Å,     A=6-883.
4RNP,    X-ray, 3.00 Å,     A/B/C=1-883.