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Modified nucleotides of Haloarcula marismortui 23S
rRNA and estimates of equivalent nucleotides in E. coli. If the equivalent nucleotide is modified in E. coli it is also listed along with the S. cerevisiae and human equivalent as well.
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H. marismortuia
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E. colib
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S. cerevisiaec
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Humand
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m1A628
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U571
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m1A645
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m1A1309
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Gm1950*
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C1909
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Ψ1956*
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m3Ψ1915
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Ψ2258
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Ψ3741
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Ψ1958*
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Ψ1917
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Ψ2260
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Ψ3743
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Um2587
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Um2552
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Um2921
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Um4468
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Gm2588
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G2553
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Gm2922
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Gm4469
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m3U2619
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U2584
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m3U4500
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Ψ2621
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U2586
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a Numbering as in PDB entry 1JJ2. Asterisks
indicate the corresponding nucleotides not visible in the crystal structure of
the large subunit H. marismortui at 2.4 angstroms (Klein
et al., 2001; Ban
et al., 2001). Modified nucleotides are indicated according to Kirpekar
et al., 2005.
b Numbering according to Genbank entry J01695,
annotated at the Gutell lab Comparative RNA website.
c Numbering of modifications according to Piekna-Przybylska
et al., 2007 (people.biochem.umass.edu/sfournier/fournierlab/snornadb/).
d Numbering according to U13369, modifications
indicated according to Maden,
1990 and Ofengand
and Bakin, 1997.
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