Modified nucleotides of Haloarcula marismortui 23S rRNA and estimates of equivalent nucleotides in E. coli. If the equivalent nucleotide is modified in E. coli it is also listed along with the S. cerevisiae and human equivalent as well.

H. marismortuia

E. colib

S. cerevisiaec

Humand

m1A628

U571

m1A645

m1A1309

Gm1950*

C1909

 

 

Ψ1956*

m3Ψ1915

Ψ2258

Ψ3741

Ψ1958*

Ψ1917

Ψ2260

Ψ3743

Um2587

Um2552

Um2921

Um4468

Gm2588

G2553

Gm2922

Gm4469

m3U2619

U2584

 

m3U4500

Ψ2621

U2586

 

 

a Numbering as in PDB entry 1JJ2. Asterisks indicate the corresponding nucleotides not visible in the crystal structure of the large subunit H. marismortui at 2.4 angstroms (Klein et al., 2001; Ban et al., 2001). Modified nucleotides are indicated according to Kirpekar et al., 2005.

b Numbering according to Genbank entry J01695, annotated at the Gutell lab Comparative RNA website.

c Numbering of modifications according to Piekna-Przybylska et al., 2007 (people.biochem.umass.edu/sfournier/fournierlab/snornadb/).

d Numbering according to U13369, modifications indicated according to Maden, 1990 and Ofengand and Bakin, 1997.

Last update: December 30, 2008 6:19 PM.