Small Nucleolar RNAs (snoRNAs) from the Yeast Saccharomyces cerevisiae:
A comprehensive database of
S. cerevisiae H/ACA and C/D box snoRNAs.
The sequence and numbering for the rRNA differs from those used in the previous version of the database, and from those used in some publications. The rRNA sequences used here are numbered as found at the Saccharomyces Genome Database. See the Information page for more details.
If you make use of the data presented here, please cite the following article in addition to the primary data sources:
- D. Piekna-Przybylska, W. A. Decatur, and M. J. Fournier (2007). New bioinformatic tools for analysis of nucleotide modifications in Eukaryotic rRNA. RNA Mar;13(3):305-12. Epub 2007 Feb 5.
A fully-functioning upgraded database is now available here.
A manuscript describing the tools available here and the upgrading of the database is now published in RNA.
Several links concerning enzymes involved in modfications updated.
A version of the 3D modification map for yeast was added where the parts of the A-site tRNA (nts 1-25 and 45-76) not visible in the 2.8 Å structure were added back for a complete A-site tRNA. This was done by modeling the 5.5 Å structure (1gix/1jgo) tRNAs onto the tRNAs in the 2.8 Å structure and removing all the 5.5 Å structure tRNA atoms except for those not visible in the 2.8 Å structure. These new map interface includes a tRNA Nucleotide selector feature on the bottom panel of convenience buttons as well.
Added new content to snR30.
Added new content to U3.
Added new content concerning the modification of the hypermodified site in the small ribosomal subunit RNA (SSU-1191).