snR87

ALTERNATE NAMES: None reported

LENGTH: 109 nts

PROCESS: 2'-O-methylation of rRNA

TARGET SITE(S):
18S rRNA: Am436

Guide Domains
 
Details of the guide at the Lowe Lab S. cerevisiae Methylation Guide snoRNA Database.
  Click number to see the target site in the 2D structure: 18S-436
Click number to see the approximate location of the modification site in the ribosome:18S-436

GENOMIC ORGANIZATION: Independent gene
 

SGD ORF MAP
ORFmap

GENE DISRUPTION PHENOTYPE: Viable

CORRESPONDENCES IN HUMANS AND PLANTS:
Click here and see that yeast and humans have corresponding modifications and guide snoRNAs.
Click here and see that yeast and Arabidopsis have corresponding modifications and guide snoRNAs.

PHYLOGENETIC CONSERVATION IN FUNGI:
Click here to examine conservation of the snoRNA in fungal genomes using BLAST.

RNA SEQUENCE:

  1 guaacugaau gaugauauaa uuugcgaucu agggcuaauc acuuggaaca ccgccauguu
 61 cuauaugggu gauuagcgaa gugcgaaaaa uuuuuuaucu gauauuuuc

 

YEAST GENOME DATABASE ENTRY:
Click here to view the SGD entry for this snoRNA.

REFERENCES:
Davis, C. A., and M. Ares, Jr. 2006. Accumulation of unstable promoter-associated transcripts upon loss of the nuclear exosome subunit Rrp6p in Saccharomyces cerevisiae. Proc. Natl. Acad. Sci. U. S. A. 103:3262-3267.


Last update: October 13, 2006 7:58 AM.