ALTERNATE NAMES: None reported
LENGTH: 1004 nts
PROCESS: Pseudouridine formation in rRNA
TARGET SITE(S): 25S rRNA: Y2314
GENOMIC ORGANIZATION: Independent gene
GENE DISRUPTION PHENOTYPE: Viable
CORRESPONDENCES IN HUMANS AND PLANTS: Click here and see that yeast and humans have corresponding modifications and guide snoRNAs.
Click here and see that yeast and Arabidopsis have corresponding modifications and guide snoRNAs.
PHYLOGENETIC CONSERVATION IN FUNGI: Click here to examine conservation of the snoRNA in fungal genomes using BLAST.
RNA SEQUENCE:
1 uaaccauuga ugaaauucua uugaaugucc ccaauuuucg gaaaaggacu gcaccgaaau 61 auuucaauca aaaucauuua ucguuuuguu uagcuauuuu uuucucaaau uaucacucuu 121 uucuuccuuu uucauucucu caauuguucu uuuuauuuga ggaaauuuga uuguauugca 181 uauacaacua ugcgaugcac uuuguucauu uuaacuuugg auauaugugc cuugcuauga 241 acgcguucau uuuuaaguga ccggacccua aaauauucag guagcaugac ggaagcuaug 301 aauuaauccu gguggagggg uguguucagu uugagggagg augauaaaau ggaacggaga 361 uugcaaggag acguagaaaa uaaaguagga gcaaauggau uuucugcuug gcgguauagc 421 acguuugagu uuuucagucg ugucuauguu cagguuuaug auaugcugug guugauucug 481 uugauucaca cguuucgcuu ccauauagug uguuaacgga aacuccaugu uaagguuuau 541 uauaagaaaa uuuuuugaau uuguucuuuu uauauugguu uacucuccuc gugauuucuu 601 uucuuuuuuu aucgucaucc ucucugaaug uauuuauuac gcauggcuuu uauucauugc 661 uuucuaacug ugaugggagu uuuuuucuug uugcauaaau gaacgugggc gagguuuuua 721 uuuucaaacu ugguguacua uagugcaaug cguuguuaau uguaauacga uguuucuucg 781 auaaaaggag cggagggaga aggugaaauu acgaaggaaa gaaagagaug agaaaucaag 841 aaugaagcaa gacauugauu gauaugguug uuuucggugc auguuugauu acuaaaaguu 901 ggggcauucg augguuuaca gaagucauaa auucaaauau cccguuuaau cgcucaucua 961 uuaaaaucaa uaguagaaug uaguuucaua cccgggagaa auuc
YEAST GENOME DATABASE ENTRY:Click here to view the SGD entry for this snoRNA.
REFERENCES: Torchet, C., G. Badis, F. Devaux, G. Costanzo, M. Werner, and A. Jacquier. 2005. The complete set of H/ACA snoRNAs that guide rRNA pseudouridylations in Saccharomyces cerevisiae. RNA 11:928-938.
