ALTERNATE NAMES: None reported
LENGTH: 176 nts
PROCESS: Pseudouridine formation in rRNA
TARGET SITE(S): 18S rRNA: Y1181
GENOMIC ORGANIZATION: Independent gene
GENE DISRUPTION PHENOTYPE: Viable
CORRESPONDENCES IN HUMANS AND PLANTS: Click here and see that yeast and humans have corresponding modifications and guide snoRNAs.
None reported in plants
PHYLOGENETIC CONSERVATION IN FUNGI: Click here to examine conservation of the snoRNA in fungal genomes using BLAST.
RNA SEQUENCE:
1 uacuagcaca uaugucaaau uccuaauuaa cguuuuuuau auucaucguu ucuuagagcc 61 guaauugugc ugauaucaau aucagggaag aacauaccau auagaggugu caaguacacc 121 gaacgaucgu ggugcucccu cagccacggg cgugcuugga cgcuauuccc acauau
YEAST GENOME DATABASE ENTRY:Click here to view the SGD entry for this snoRNA.
REFERENCES: Schattner, P., W. A. Decatur, C. A. Davis, M. Ares, Jr., M. J. Fournier, and T. M. Lowe. 2004. Genome-wide searching for pseudouridylation guide snoRNAs: analysis of the Saccharomyces cerevisiae genome. Nucleic Acids Res. 32:4281-4296. Torchet, C., G. Badis, F. Devaux, G. Costanzo, M. Werner, and A. Jacquier. 2005. The complete set of H/ACA snoRNAs that guide rRNA pseudouridylations in Saccharomyces cerevisiae. RNA 11:928-938.
