snR68

ALTERNATE NAMES: None reported

LENGTH: 136 nts

PROCESS: 2'-O-methylation of rRNA

TARGET SITE(S):
25S rRNA: Am2640

Guide Domains
 
Details of the guide at the Lowe Lab S. cerevisiae Methylation Guide snoRNA Database.
  Click number to see the target site in the 2D structure: 25S-2640
Click number to see the approximate location of the modification site in the ribosome:25S-2640

GENOMIC ORGANIZATION: Independent gene
 

SGD ORF MAP
ORFmap

GENE DISRUPTION PHENOTYPE: Viable

CORRESPONDENCES IN HUMANS AND PLANTS:
None reported in human
Click here and see that yeast and Arabidopsis have corresponding modifications and guide snoRNAs.

PHYLOGENETIC CONSERVATION IN FUNGI:
Click here to examine conservation of the snoRNA in fungal genomes using BLAST.

RNA SEQUENCE:

   1 uaucaugaug agcauuuauu uuacugcguu aucguauuga cgggggcugu uuaaguacag
  61 ucuguuuuau aaucuauauu cauuuauauu uuauauuucu uaccgaggaa auugacucuu
 121 aacagauuug cugaaa
 

YEAST GENOME DATABASE ENTRY:
Click here to view the SGD entry for this snoRNA.

REFERENCES:
Lowe, T. M., and S. R. Eddy. 1999. A computational screen for methylation guide snoRNAs in yeast. Science 283:1168-1171.


Last update: October 13, 2006 7:33 AM.