snR51

ALTERNATE NAMES: None reported

LENGTH: 107 nts

PROCESS: 2'-O-methylation of rRNA

TARGET SITE(S):
18S rRNA: Am100
25S rRNA: Um2729

Guide Domains
 
Details of the guides at the Lowe Lab S. cerevisiae Methylation Guide snoRNA Database.
  Click number to see the target site in the 2D structure: 18S-100, 25S-2729
Click number to see the approximate location of the modification site in the ribosome:18S-100, 25S-2729

GENOMIC ORGANIZATION: Polycistronic gene
 

SGD ORF MAP
ORFmap

GENE DISRUPTION PHENOTYPE: Viable

CORRESPONDENCES IN HUMANS AND PLANTS:
Click here and see that yeast and humans have corresponding modifications and guide snoRNAs.
None reported in plants

PHYLOGENETIC CONSERVATION IN FUNGI:
Click here to examine conservation of the snoRNA in fungal genomes using BLAST.

RNA SEQUENCE:

   1 uauuaugaug auuuuuuuau auucacacug uacuagauug gucucuuuaa cgaaggggcu
  61 aauugaugac uacaaaauaa aaaauaacug auuuaaugac ucugaaa

YEAST GENOME DATABASE ENTRY:
Click here to view the SGD entry for this snoRNA.

REFERENCES:
Lowe, T. M., and S. R. Eddy. 1999. A computational screen for methylation guide snoRNAs in yeast. Science 283:1168-1171.


Last update: October 13, 2006 7:13 AM.