A. thaliana 25S rRNA
      (only indicating mapped modifications and those strongly predicted to be
      modified positions;see 2D modification map for Arabidopsis and table with equivalents)

        Show All (please note that indicated snoRNAs are only proposed candidates for guiding particular positions)

   1  GCGACCCCAG GUCAGGCGGG AUUACCCGCU GAGUUUAAGC AUAUCAAUAA

  51  GCGGAGGAAA AGAAACUAAC AAGGAUUCCC UUAGUAACGG CGAGCGAACC

 101  GGGAAGAGCC CAGCUUGAAA AUCGGACGUC UUCGGCGUUC GAAUUGUAGU

 151  CUGGAGAAGC GUCCUCAGCG ACGGACCGGG CCUAAGUUCC CUGGAAAGGG

 201  GCGCCAGAGA GGGUGAGAGC CCGUCGUGCC CGGACCCUGU CGCACCACGA

 251  GGCGCUGUCU ACGAGUCGGG UUGUUUGGGA AUGCAGCCCC AAUCGGGCGG

 301  UAAAUUCCGU CCAAGGCUAA AUACGGGCGA GAGACCGAUA GCGAACAAGU

 351  ACCGCGAGGU AAAGAUGAAA AGGACUUUGA AAAGAGAGUC AAAGAGUGCU

 401  UGAAAUUGUC GGGAGGGAAG CGGAUGGGGG CCGGCGAUGC GUCCUGGUCG

 451  GAUGCGGAAC GGAGCAAUCC GGUCCGCCGA UCGAUUCGGG GCGUGGACCG

 501  ACGCGGAUUA CGGUGGCGGC CUAAGCCCGG GCUUUUGAUA CGCUUGUGGA

 551  GACGUCGCUG CCGUGAUCGU GGUCUGCAGC ACGCGCCUAA CGGCGUGCCU

 601  CGGCAUCAGC GUGCUCCGGG CGUCGGCCUG UGGGCUCCCC AUUCGACCCG

 651  UCUUGAAACAm CGGACCAAGG AGUCmUGACAU GUGUGCGAGU CAACGGGUGA

 701  GUAAACCCGU AAGGCGCAAG GAAGCUGAUU GGCGGGAUCC UCGCGGGUGC

 751  ACCGCCGACC GACCUUGAUC UUCUGAGAAG GGΨUmCGAGUG UGAGCAUGCC

 801  UGUCGGGACC CGmAAmAGAUGG UGAAmCΨAUGC CUGAGCGGGG UAAAGCCAGA

 851  GGAAACUCUG GUGGAAGCCC GCAGCGAUAC UGAmCGUGCAA AUCGUUCGUC

 901  UGACUUGGGU AUAGGmGGCGA AAGACUAAUC GAACCAUCUA GUAGCUGGUU

 951  CCCUCCGAAG UUUCCCUCAG GAUAGCUGGA GCUCGGACGC GAGUUCUAΨC

1001  GGGUAAAGCC AAΨGAUUAGA GGCAUUGGGG GCGCAACGCC UCGACCUAUU

1051  CUCAAACUUU AAAUAGGUAG GACGUGUCGG CUGCUUUGUU GAGCCGUCAC

1101  ACGGAAUCGA GAGCUCCAAG UGGGCCAUUU UUGGUAAGCAm GAACUGGCGA

1151  UGCGGGAUGA ACCGGAAGCC GGGUUACGGU GCCCAACUGC GCGCUAACCU

1201  AGAACCCACA AAGGGUGUUG GUCGAUUAAG ACAGCAGGAC GGUGGUCAUG

1251  GAAGUCGAAAm UCCGCUAAGG AGUGUmGUAAC AACUCACCUG CCGAAUCAAC

1301  UAGCCCCGAA AAUGGAUGGC GCUUAAGCGC GACCUAUACC CGGCCGUCGG

1351  GGCAAGAGCC AGGCCUCGAU GAGUAGGAGG GCGCGGCGGU CGCUGCAAAA

1401  CCUAGGGCGC GAGGCGCGGA GCGGCCGUCG GUGCAGAUCmU UGGUGGUAGU

1451  AmGmCAAAUAUU CAAAUGAGAA CUUUGAAGGC CGAAGAGGGG AAAGGUUCCA

1501  UGUGAACGGCm ACUUGCACAU GGGUUAGUCG AUCCUAAGAG UCGGGGGAAA

1551  CCCGUCUGAU AGCGCUUAAG CGAACUUCGA AAGGGGAUCC GGUUAAAAUU

1601  CCGGAACCGG GACGUGGCGG UUGACGGCAA CGUUmAGGGAG UCCGGAGACG

1651  UCGGCGGGGG CCUCGGGAAG AGUUAUCUUU UCUGUUUAAC AGCCUGCCCA

1701  CCCUGGAAAC GGCUCAGCCG GAGGUAGGGU CCAGCGGCUG GAAGAGCACC

1751  GCACGUCGCG UGGUGUCCGG UGCGCCCCCG GGCGCCCUUG AAAAUCCGGA

1801  GGACCGAGUG CCGCUCACGC CCGGUCGUAC UCAUAACCGCm AUCAGmGUCUCm

1851  CAAGGUGAAC AmGCCUCUGGU CGAUGGAACA AUmGUAGGCAA GGGAAGUCGG

1901  CAAAAUGGAU CCGUAACUmUC GGGAAAAGGA UUGGCUCUGA GGGCUGGGCU

1951  CGGGGGUCCC AGUUCCGAAC CCGUCGGCUG UCAGCGGACU GCUCGAGCUG

2001  CUUCCGCGGC GAGAGCGGGU CGCCGGCUGC CGGCCGGGGG ACGACUGGGA

2051  ACGGCUCUCU CGGGAGCUUU CCCCGGGCGU CGAACAGUCA GCUCAGAACU

2101  GGUACGGACA AGGGmGAmAUCC GACUGΨUUAA UUAAAACAAA GCAUUGCGAU

2151  GGUCCCUGCG GAUGCUAACG CAAUGUGAUU UCUGCCCAGU GCUCUGAAUG

2201  ΨCAAmAGUGAAm GAAAUUCAAC CAAGCGCGGG UAAACGGCGG GAGΨAACΨAΨ

2251  GACUCUCUUA AGGUAGCCAA AmUGCCUCGmUC AUCUAAUUAG UGACGCGCAU

2301  GAAΨGGAUUA AmCGAGAmUUCC CACUGUCmCCU GUCUACUAΨC CAGCGAAACC

2351  ACAGCmCAAGG GAACGGGCUU GGCAGAAUCA GCGGGGAAAG AAGACCCUGUm

2401  UGAGmCUUGAC UmCUAGUCCGA CUUUGUGAAA UGACUUGAGA GGUGUAGGAU

2451  AAGUGGGAGC UUCGGCGCAA GUGAAAUACC ACUACUUUUA ACGUUAUUUU

2501  ACUUACUCCG UGAAUCGGAG GCCGGGGUAC AACCCCUGUU UUUGGUCCCA

2551  AGGCUCGCUU CGGCGGGUCG AUCCGGGCGG AGGACAUUGU CAGGUGGGGA

2601  GUUUGGCUGGm GGCGGCACAU CUGUUAAAAG AmUAACGCAGG UmGmUCCUAAGA

2651  UGAGCUCAAC GAGAACAGAA AUCUCGUGUG GAACAAAAGG GUAAAAGCUC

2701  GUUUGAΨUCU GAUUUUCAGU ACGAAUACGA ACCGUGAAAG CGUGGCCUAU

2751  CGAUCCUUUA GACUUCGGAA UUΨGAAGCUA GmAGmGUGUCAG AAAAGUUACC

2801  ACAGGmGAUAA CUGGCΨUGUG GCAGCCmAAGC GUUCAUAGCG ACGUUGCmUUU

2851  UUGAUCmCUUC GAUGUCGGCmΨ CUUmCCUAUCA UUGUGAAGCA GAAUUCACCA

2901  AGUGUUGmGAU UGΨUCACCCA CCAAUAGGGA ACGUGAmGCmUG GGmUmUUAGACmC

2951  GUCGUGAGAC AGGUUAGUUU UACCCUACUG AUGCCCGCGU CGCGAUAGUA

3001  AUUCAACCUA GUACGAGAGG AACCGUUGAU UCGCACAAUU GGUCAUCGCG

3051  CUUGGUUGAA AAGCCAGUGG CGCGAAGCUA CCGUGCGCUG GAUUAUGACU

3101  GAACGCCUCU AAGUCAGAAU CCGGGCUAGA AGCGACGCAU GCGCCCGCCG

3151  CCCGAUUGCC GACCCUCAGU AGGAGCUUAG GCUCCAAAGG CACGUGUCGU

3201  UGGCUAAGUC CGUUCGGCGG AACGGUCGUU CGGACCGCCU UGAAUUAUAA

3251  UUACCACCGA GCGGCGGGUA GAAUCCUUUG CAGACGACUU AAAUACGCGA

3301  CGGGGUAUUG UAAGUGGCAG AGUGGCCUUG CUGCCACGAU CCACUGAGAU

3351  UCAGCCCUUU GUCGCUAAGA UUCGA

        Show All

    Sources for details on sequences and snoRNA guides:
    Barneche et al. 2001. J. Mol. Biol. 311:57-73.
    Brown et al. 2001. RNA 7:1817-1832.
    Sequence with Accession number X52320.
    Brown et al. 2003. Nucleic Acids Res. 31:432-435
    Plant snoRNA database.
Last updatSeptember 23, 2007 7:51 PM-->.