A. thaliana 18S rRNA
(only indicating mapped modifications and those strongly predicted to be
modified positions;see 2D modification map for Arabidopsis and table with equivalents)
Show All (please note that indicated snoRNAs are only proposed candidates for guiding particular positions)
1 UACCUGGUUG AUCCUGCCAG UAGUCAUAmUG CUUGUCUCAA AGAUUAAGCC
AtU27
51 AUGCAUGUGU AAGUAUGAAC GAAUUCAGAC UGUGAAACUG CGAAUGGCUC
101 AUUAAAUCAG ΨUAUAGUUUG UUUGAUGGUA ACUACUACUC GGAUAACCGU
AtsnoR100
151 AGUAAUUCUA GAmGCUAAUAC GUGCAACAAA CCCCGACUUA UGGAAGGGAC
AtsnoR18
201 GCAUUUAUUA GAUAAAAGGU CGACGCGGGC UCUGGCUUGC UCUGAUGAUU
251 CAUGAUAACU CGACGGAUCG CAUGGCCUCU GUGCUGGCGA CGCAUCAUUC
301 AAAUUUCUGC CCUAUCAACU UUCGAUGGUA GGAUAGUGGC CUACCAUGGU
351 GGUAACGGGΨ GACGGAGAAU UAGGGUUCGA UUCCGGAGAGm GmGAGCCUGAG
AtsnoR86
AtsnoR30
AtsnoR58
401 AAACGGCUAC CACAUCmCAAG GAAGGCAGCA GGCGCGCAmAA UUACCCAAUC
AtU14
AtU16/AtsnoR15
451 CUGACACGGG GAGGUAmGUGA CmAAUAAAUAA CAAUACCGGG CUCUUUCGAG
AtsnoR17
AtU56
501 UCUGGUAAUU GGAAUGAGUA CAAUCUAAAU CCCUUAACGA GGAmUCCAUUG
AtsnoR41Y/AtsnoR43
551 GAGGGCAAGU CUGGUGCCAG CAGCCGCGGUm AAUUCCAGCU CCAAUAGmCGU
AtsnoR77Y
AtU54
601 AUAΨUUAAGmU UGUUGCAGUU AmAAAAGCUCG UAGΨUGAACC UUGGGAUGGG
AtsnoR91
AtsnoR62.1
AtU36
AtsnoR73
651 UCGGCCGGUC CGCCUUUGGU GUGCAUUGGU CGGCUUGUCC CUUCGGUCGG
701 CGAUACGCUC CUGGUCUUAA UUGGCCGGGU CGUGCCUCCG GCGCUGUUAC
751 UUUGAAGAAA ΨUAGAGUGCU CAAAGCAAGC CUACGCUCUG GAUACAUUAmG
AtsnoR91
AtsnoR53Y
801 CAUGGGAUAA CAUCAUAGGA UUUCGAUCCU AUUGUGUUGG CUUCGGGAUC
851 GGAGUAAUGA UUAACAGGGA CAGUCGGGGG CAUUCGUAUU UCAUAGUCAG
901 AGGUGAAAUU CUUGGAUUUA UGAAAGACGA ACAACUGCGA AAGCAUUΨGC
AtsnoR90
951 CAAGGAUGUU UUCAUUAAUC AAGAAmCGAAA GUUGGGGGCU CGAAGACGAΨ
AtU59
AtsnoR72/AtsnoR5
1001 CAGAUACCGUm CmCUAGUCUCA ACCAUAAACG AUGCCGACCA GGGAUCAGCG
AtsnoR20.1
AtsnoR20.2
1051 GAUGUUGCUU AUAGGACUCC GCUGGCACCU UAUGAGAAAU CAAAGUUUUU
1101 GGGUUCCGGG GmGGAGUAΨGG UCGCAAGGCU GAAACUUAAA GGAAUUGACG
AtsnoR9.1
AtsnoR72/AtsnoR5
1151 GAAGGGCACC ACCAGGAGUG GAGCCUGCGG CUUAAUUUGA CUCAACACGG
1201 GGAAACUUAC CAGGUCCAGA CAUAGUAAGG AUmUGACAGAC UGAGAGCUCU
AtsnoR14
1251 UUCUUGAUUC UAUmGGGUGGUm GmGmUGCAUGGC CGUUCUUAGU UGGUGGAGCG
AtsnoR32
AtU33/AtsnoR34(1270)
AtsnoR26(1271)
AtsnoR21(1272)
AtsnoR21
1301 AUUUGUCUGG UUAAUUCCGU UAACGAAmCGA GACCUCAGCC UGCUAACUAG
AtsnoR32
1351 CUACGUGGAG GCAUCCCUUC ACGGCCGGCU UmCUUAGAGGG ACUAUGGCCG
AtU61
1401 UUUAGGCCAA GGAAGUUUGA GGCAAUAACA GmGUCUGUGAU GCCCUmUAGAU
AtsnoR19
AtsnoR19
1451 GUUCUGGGCC GCACGCGCGC UACACUGAUG UAUUCAACGA GUUCACACCU
1501 UGCCGACAGG CCCGGGUAAU CUUUGAAAUU UCAUCGUGAU GGGGAUAGAU
1551 CAUUGCAAUU GUUGGUCUUC AACGAGGAAU UCCUAGUAAG CGCGAGUCAU
1601 CAGCUCGCGU UGACUACGUC CCUGCCmCUUU GUACACACCG CmCCGUCGCUC
AtsnoR70
AtU43
1651 CUACCGAUUG AAUGAUCCGG UGAAGUGUUC GGAUCGCGGC GACGUGGGUG
1701 GUUCGCCGCC CGCGACGUCG CGAGAAGUCC ACUAAACCUU AUCAUUUAGA
1751 GGAAmGGAGAA GUCGUAACAA GGUUUCCGUA GGUGAACCUG CGGAAGGAUC
AtsnoR23/AtsnoR70/AtsnoR12.1
1801 AUUG
Show All
Sources for details on sequences and snoRNA guides:
Barneche et al. 2001. J. Mol. Biol. 311:57-73.
Brown et al. 2001. RNA 7:1817-1832.
Sequence with Accession number X16077.
Brown et al. 2003. Nucleic Acids Res. 31:432-435
Plant snoRNA database.
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