A. thaliana 18S rRNA
      (only indicating mapped modifications and those strongly predicted to be
      modified positions;see 2D modification map for Arabidopsis and table with equivalents)

        Show All (please note that indicated snoRNAs are only proposed candidates for guiding particular positions)

   1  UACCUGGUUG AUCCUGCCAG UAGUCAUAmUG CUUGUCUCAA AGAUUAAGCC

  51  AUGCAUGUGU AAGUAUGAAC GAAUUCAGAC UGUGAAACUG CGAAUGGCUC

 101  AUUAAAUCAG ΨUAUAGUUUG UUUGAUGGUA ACUACUACUC GGAUAACCGU

 151  AGUAAUUCUA GAmGCUAAUAC GUGCAACAAA CCCCGACUUA UGGAAGGGAC

 201  GCAUUUAUUA GAUAAAAGGU CGACGCGGGC UCUGGCUUGC UCUGAUGAUU

 251  CAUGAUAACU CGACGGAUCG CAUGGCCUCU GUGCUGGCGA CGCAUCAUUC

 301  AAAUUUCUGC CCUAUCAACU UUCGAUGGUA GGAUAGUGGC CUACCAUGGU

 351  GGUAACGGGΨ GACGGAGAAU UAGGGUUCGA UUCCGGAGAGm GmGAGCCUGAG

 401  AAACGGCUAC CACAUCmCAAG GAAGGCAGCA GGCGCGCAmAA UUACCCAAUC

 451  CUGACACGGG GAGGUAmGUGA CmAAUAAAUAA CAAUACCGGG CUCUUUCGAG

 501  UCUGGUAAUU GGAAUGAGUA CAAUCUAAAU CCCUUAACGA GGAmUCCAUUG

 551  GAGGGCAAGU CUGGUGCCAG CAGCCGCGGUm AAUUCCAGCU CCAAUAGmCGU

 601  AUAΨUUAAGmU UGUUGCAGUU AmAAAAGCUCG UAGΨUGAACC UUGGGAUGGG

 651  UCGGCCGGUC CGCCUUUGGU GUGCAUUGGU CGGCUUGUCC CUUCGGUCGG

 701  CGAUACGCUC CUGGUCUUAA UUGGCCGGGU CGUGCCUCCG GCGCUGUUAC

 751  UUUGAAGAAA ΨUAGAGUGCU CAAAGCAAGC CUACGCUCUG GAUACAUUAmG

 801  CAUGGGAUAA CAUCAUAGGA UUUCGAUCCU AUUGUGUUGG CUUCGGGAUC

 851  GGAGUAAUGA UUAACAGGGA CAGUCGGGGG CAUUCGUAUU UCAUAGUCAG

 901  AGGUGAAAUU CUUGGAUUUA UGAAAGACGA ACAACUGCGA AAGCAUUΨGC

 951  CAAGGAUGUU UUCAUUAAUC AAGAAmCGAAA GUUGGGGGCU CGAAGACGAΨ

1001  CAGAUACCGUm CmCUAGUCUCA ACCAUAAACG AUGCCGACCA GGGAUCAGCG

1051  GAUGUUGCUU AUAGGACUCC GCUGGCACCU UAUGAGAAAU CAAAGUUUUU

1101  GGGUUCCGGG GmGGAGUAΨGG UCGCAAGGCU GAAACUUAAA GGAAUUGACG

1151  GAAGGGCACC ACCAGGAGUG GAGCCUGCGG CUUAAUUUGA CUCAACACGG

1201  GGAAACUUAC CAGGUCCAGA CAUAGUAAGG AUmUGACAGAC UGAGAGCUCU

1251  UUCUUGAUUC UAUmGGGUGGUm GmGmUGCAUGGC CGUUCUUAGU UGGUGGAGCG

1301  AUUUGUCUGG UUAAUUCCGU UAACGAAmCGA GACCUCAGCC UGCUAACUAG

1351  CUACGUGGAG GCAUCCCUUC ACGGCCGGCU UmCUUAGAGGG ACUAUGGCCG

1401  UUUAGGCCAA GGAAGUUUGA GGCAAUAACA GmGUCUGUGAU GCCCUmUAGAU

1451  GUUCUGGGCC GCACGCGCGC UACACUGAUG UAUUCAACGA GUUCACACCU

1501  UGCCGACAGG CCCGGGUAAU CUUUGAAAUU UCAUCGUGAU GGGGAUAGAU

1551  CAUUGCAAUU GUUGGUCUUC AACGAGGAAU UCCUAGUAAG CGCGAGUCAU

1601  CAGCUCGCGU UGACUACGUC CCUGCCmCUUU GUACACACCG CmCCGUCGCUC

1651  CUACCGAUUG AAUGAUCCGG UGAAGUGUUC GGAUCGCGGC GACGUGGGUG

1701  GUUCGCCGCC CGCGACGUCG CGAGAAGUCC ACUAAACCUU AUCAUUUAGA

1751  GGAAmGGAGAA GUCGUAACAA GGUUUCCGUA GGUGAACCUG CGGAAGGAUC

1801  AUUG

        Show All

    Sources for details on sequences and snoRNA guides:
    Barneche et al. 2001. J. Mol. Biol. 311:57-73.
    Brown et al. 2001. RNA 7:1817-1832.
    Sequence with Accession number X16077.
    Brown et al. 2003. Nucleic Acids Res. 31:432-435
    Plant snoRNA database.

Last update: September 23, 2007 7:38 PM.