snR63

ALTERNATE NAMES: None reported

LENGTH: 255 nts

PROCESS: 2'-O-methylation of rRNA

TARGET SITE(S):
25S rRNA: Am2256

Guide Domains
 
Details of the guide at the Lowe Lab S. cerevisiae Methylation Guide snoRNA Database.
  Click number to see the target site in the 2D structure: 25S-2256
Click number to see the approximate location of the modification site in the ribosome: 25S-2256

GENOMIC ORGANIZATION: Independent gene
 

SGD ORF MAP
ORFmap

GENE DISRUPTION PHENOTYPE: Viable

CORRESPONDENCES IN HUMANS AND PLANTS:
Click here and see that yeast and humans have corresponding modifications and guide snoRNAs.

None reported in plants

PHYLOGENETIC CONSERVATION IN FUNGI:
Click here to examine conservation of the snoRNA in fungal genomes using BLAST.

RNA SEQUENCE:

   1 uuuaaugaug aagauuuuaa uuuuccguug gucuauuaag aacagaagua cuucaaaacu
  61 acuuuuuaag accauccuuu uacaguauuu uuucaauauu guaaaacuuc ucauuuacuu
 121 ugugucuuua ugaucucauc guucuggugg accauaauca gacgcacggu auacuucguu
 181 ucuguuggag aauauuggga gucuuuuaau gugaugagug gccaacauaa ccuuauaguc
 241 auaguuacac ugauu
 

YEAST GENOME DATABASE ENTRY:
Click here to view the SGD entry for this snoRNA.

REFERENCES:
Lowe, T. M., and S. R. Eddy. 1999. A computational screen for methylation guide snoRNAs in yeast. Science 283:1168-1171.


Last update: October 5, 2006 3:03 PM.