/***********************************************************************************
*	(c) Ger Versluis 2000 version 5.411 24 December 2001 (updated Jan 31st, 2003 by Dynamic Drive for Opera7)
*	For info write to menus@burmees.nl		          *
*	You may remove all comments for faster loading	          *		
***********************************************************************************/

	var NoOffFirstLineMenus=7;			// Number of first level items
	var LowBgColor='#eeeeee';			// Background color when mouse is not over
	var LowSubBgColor='#eeeeee';			// Background color when mouse is not over on subs
	var HighBgColor='#666666';			// Background color when mouse is over
	var HighSubBgColor='#666666';			// Background color when mouse is over on subs
	var FontLowColor='black';			// Font color when mouse is not over
	var FontSubLowColor='black';			// Font color subs when mouse is not over
	var FontHighColor='black';			// Font color when mouse is over
	var FontSubHighColor='black';			// Font color subs when mouse is over
	var BorderColor='#881c1c';			// Border color
	var BorderSubColor='#881c1c';			// Border color for subs
	var BorderWidth=3;				// Border width
	var BorderBtwnElmnts=0;			// Border between elements 1 or 0
	var FontFamily="helvetica"	// Font family menu items
	var FontSize=10;				// Font size menu items
	var FontBold=1;				// Bold menu items 1 or 0
	var FontItalic=0;				// Italic menu items 1 or 0
	var MenuTextCentered='center';			// Item text position 'left', 'center' or 'right'
	var MenuCentered='center';			// Menu horizontal position 'left', 'center' or 'right'
	var MenuVerticalCentered='top';		// Menu vertical position 'top', 'middle','bottom' or static
	var ChildOverlap=.1;				// horizontal overlap child/ parent
	var ChildVerticalOverlap=.2;			// vertical overlap child/ parent
	var StartTop=251;				// Menu offset x coordinate
	var StartLeft=-10;				// Menu offset y coordinate
	var VerCorrect=0;				// Multiple frames y correction
	var HorCorrect=0;				// Multiple frames x correction
	var LeftPaddng=0;				// Left padding
	var TopPaddng=9;				// Top padding
	var FirstLineHorizontal=1;			// SET TO 1 FOR HORIZONTAL MENU, 0 FOR VERTICAL
	var MenuFramesVertical=1;			// Frames in cols or rows 1 or 0
	var DissapearDelay=1000;			// delay before menu folds in
	var TakeOverBgColor=1;			// Menu frame takes over background color subitem frame
	var FirstLineFrame='self';			// Frame where first level appears
	var SecLineFrame='self';			// Frame where sub levels appear
	var DocTargetFrame='self';			// Frame where target documents appear
	var TargetLoc='';				// span id for relative positioning
	var HideTop=0;				// Hide first level when loading new document 1 or 0
	var MenuWrap=1;				// enables/ disables menu wrap 1 or 0
	var RightToLeft=0;				// enables/ disables right to left unfold 1 or 0
	var UnfoldsOnClick=0;			// Level 1 unfolds onclick/ onmouseover
	var WebMasterCheck=0;			// menu tree checking on or off 1 or 0
	var ShowArrow=0;				// Uses arrow gifs when 1
	var KeepHilite=1;				// Keep selected path highligthed
	var Arrws=['tri.gif',5,10,'tridown.gif',10,5,'trileft.gif',5,10];	// Arrow source, width and height

function BeforeStart(){return}
function AfterBuild(){return}
function BeforeFirstOpen(){return}
function AfterCloseAll(){return}


// Menu tree
//	MenuX=new Array(Text to show, Link, background image (optional), number of sub elements, height, width);
//	For rollover images set "Text to show" to:  "rollover:Image1.jpg:Image2.jpg"

Menu1=new Array("Home","main.php","",0,33,65);

Menu2=new Array("Mods in Seq.","","",6,33,105);
	Menu2_1=new Array("E. coli","","",2,33,105);
		Menu2_1_1=new Array("16S","ec16sseq.php","",0,33,105);
		Menu2_1_2=new Array("23S","ec23sseq.php","",0,33,105);
	Menu2_2=new Array("T. thermophilus","","",2,33,105);
		Menu2_2_1=new Array("16S","tt16sseq.php","",0,33,105);
		Menu2_2_2=new Array("23S","tt23sseq.php","",0,33,105);
	Menu2_3=new Array("H. marismortui","","",1,33,105);
		Menu2_3_1=new Array("23S","hmar23sseq.php","",0,33,105);
	Menu2_4=new Array("Yeast","","",5,33,110);
		Menu2_4_1=new Array("18S","http://people.biochem.umass.edu/sfournier/fournierlab/snornadb/target18s.php","",0,33,110);
		Menu2_4_2=new Array("5.8S","http://people.biochem.umass.edu/sfournier/fournierlab/snornadb/target58s.php","",0,33,110);
		Menu2_4_3=new Array("25S","http://people.biochem.umass.edu/sfournier/fournierlab/snornadb/target25s.php","",0,33,110);
		Menu2_4_4=new Array("5S","http://people.biochem.umass.edu/sfournier/fournierlab/snornadb/target5s.php","",0,33,110);
		Menu2_4_5=new Array("Yeast Guides","http://people.biochem.umass.edu/sfournier/fournierlab/snornadb/mastertable.php","",0,33,110);
	Menu2_5=new Array("Arabidopsis","","",3,33,110);
		Menu2_5_1=new Array("18S","at18sseq.php","",0,33,105);
		Menu2_5_2=new Array("5.8S","at58sseq.php","",0,33,105);
		Menu2_5_3=new Array("25S","at25sseq.php","",0,33,105);
	Menu2_6=new Array("Human","","",3,33,110);
		Menu2_6_1=new Array("18S","hum18sseq.php","",0,33,105);
        Menu2_6_2=new Array("5.8S","hum58sseq.php","",0,33,0);
        Menu2_6_3=new Array("28S","hum28sseq.php","",0,33,0);
    

		
Menu3=new Array("Mods in 2D Str.","","",6,33,110);
	Menu3_1=new Array("E. coli","","",2,33,110);
		Menu3_1_1=new Array("16S","ec2d16sframes.php","",0,33,105);
		Menu3_1_2=new Array("23S","ec2d23sframes.php","",0,33,105);
	Menu3_2=new Array("T. thermophilus","","",2,33,105);
		Menu3_2_1=new Array("16S","ttssu2dframes.php","",0,33,105);
		Menu3_2_2=new Array("23S","ttlsu2dframes.php","",0,33,105);
	Menu3_3=new Array("H. marismortui","","",1,33,105);
		Menu3_3_1=new Array("23S","hmarlsu2dframes.php","",0,33,105);
	Menu3_4=new Array("Yeast","","",3,33,110);
		Menu3_4_1=new Array("18S","ysssu2dframes43d.php","",0,33,110);
		Menu3_4_2=new Array("25S + 5.8S","yslsu2dframes43d.php","",0,33,110);
		Menu3_4_3=new Array("5S","http://people.biochem.umass.edu/sfournier/fournierlab/snornadb/ys2d5s.htm","",0,33,110);
	Menu3_5=new Array("Arabidopsis","","",2,33,110);
		Menu3_5_1=new Array("18S","atssu2dframes.php","",0,33,110);
        Menu3_5_2=new Array("5.8S + 25S","atlsu2dframes.php","",0,33,0);
	Menu3_6=new Array("Human","","",2,33,110);
		Menu3_6_1=new Array("18S","humssu2dframes.php","",0,33,110);
        Menu3_6_2=new Array("5.8S + 28S","humlsu2dframes.php","",0,33,0);
        

Menu4=new Array("Mod. sites in 3D","","",6,33,120);
	Menu4_1=new Array("E. coli","","",5,33,120);
		Menu4_1_1=new Array("In Thermus 5.5 \u00c5 70S","ec3dmodsribo55/index.htm","",0,33,210);
		Menu4_1_2=new Array("In E. coli Cryo 70S","ec3dmodsriboem/index.htm","",0,33,210);
		Menu4_1_3=new Array("In E. coli 3.2 \u00c5 70S","ec3dmodsribo212/index.htm","",0,33,210);
		Menu4_1_4=new Array("In Thermus 2.8 \u00c5 70S","ec3dmodsribo28/index.htm","",0,33,210);
		Menu4_1_5=new Array("In Thermus 2.8 \u00c5 70S PLUS A","ec3dmodsribo28plus/index.htm","",0,33,210);
	Menu4_2=new Array("T.thermophilus","","",2,33,110);
		Menu4_2_1=new Array("5.5 \u00c5","tt3dmodsribo55/index.htm","",0,33,140);	
		Menu4_2_2=new Array("2.8 \u00c5","tt3dmodsribo28/index.htm","",0,33,140);
	Menu4_3=new Array("H. marismortui","","",3,33,140);	
		Menu4_3_1=new Array("2.4 \u00c5 50S","hm3dmodsribo24/index.htm","",0,33,165);
		Menu4_3_2=new Array("50S In Thermus 5.5 \u00c5 70S","hm3dmodsribott55/index.htm","",0,33,165);
		Menu4_3_3=new Array("50S In Thermus 2.8 \u00c5 70S","hm3dmodsribott28/index.htm","",0,33,165);
	Menu4_4=new Array("Yeast","","",3,33,110);
		Menu4_4_1=new Array("5.5 \u00c5 70S","http://people.biochem.umass.edu/sfournier/fournierlab/snornadb/snrs/ribo/portal.htm?nt=33","",0,33,140);
		Menu4_4_2=new Array("2.8 \u00c5 70S","http://people.biochem.umass.edu/sfournier/fournierlab/snornadb/snrs/ribo28/index.php","",0,33,140);
		Menu4_4_3=new Array("2.8 \u00c5 70S PLUS A","http://people.biochem.umass.edu/sfournier/fournierlab/snornadb/snrs/ribo28plus/index.php","",0,33,140);
	Menu4_5=new Array("Arabidopsis","","",2,33,110);
		Menu4_5_1=new Array("5.5 \u00c5 70S","at55/index.php","",0,33,110);
    		Menu4_5_2=new Array("2.8 \u00c5 70S","at28/index.php","",0,33,0);
	Menu4_6=new Array("Human","","",2,33,110);
		Menu4_6_1=new Array("5.5 \u00c5 70S","hum55/index.php","",0,33,110);
    		Menu4_6_2=new Array("2.8 \u00c5 70S","hum28/index.php","",0,33,0);

Menu5=new Array("Equiv. Sites","","",5,33,83);
	Menu5_1=new Array("T. thermophilus","","",2,33,105);
		Menu5_1_1=new Array("16S","eqthermssu.php","",0,33,105);
		Menu5_1_2=new Array("23S","eqthermlsu.php","",0,33,105);
	Menu5_2=new Array("H. marismortui","","",1,33,105);
		Menu5_2_1=new Array("23S","eqhmarlsu.php","",0,33,105);
	Menu5_3=new Array("Yeast","","",5,33,100);
		Menu5_3_1=new Array("Psi in 18S","http://people.biochem.umass.edu/sfournier/fournierlab/snornadb/psi18s.php","",0,33,110);
        	Menu5_3_2=new Array("Nm in 18S","http://people.biochem.umass.edu/sfournier/fournierlab/snornadb/nm18s.php","",0,33,0);
		Menu5_3_3=new Array("Psi in 25S","http://people.biochem.umass.edu/sfournier/fournierlab/snornadb/psi25s.php","",0,33,130);
        	Menu5_3_4=new Array("Nm in 25S","http://people.biochem.umass.edu/sfournier/fournierlab/snornadb/nm25s.php","",0,33,0);
		Menu5_3_5=new Array("Base Methyls","http://people.biochem.umass.edu/sfournier/fournierlab/snornadb/basemethyls.php","",0,33,0);
	Menu5_4=new Array("Arabidopsis","","",2,33,130);
		Menu5_4_1=new Array("18S","eqatssu.php","",0,33,105);
		Menu5_4_2=new Array("5.8S + 25S","eqatlsu.php","",0,33,105);
	Menu5_5=new Array("Human","","",2,33,130);
		Menu5_5_1=new Array("18S","eqhumssu.php","",0,33,105);
		Menu5_5_2=new Array("5.8S + 28S","eqhumlsu.php","",0,33,105);

Menu6=new Array("Paint Your Own","","",4,33,115);
        Menu6_1=new Array("In 5.5 \u00c5 70S","pyotutorial55.php","",0,33,140);
        Menu6_2=new Array("In 2.8 \u00c5 70S","pyotutorial28.php","",0,33,0);
        Menu6_3=new Array("In 2.8 \u00c5 70S PLUS A","pyotutorial28plus.php","",0,33,0);
	  Menu6_4=new Array("tRNA Nt Selector","trnaselintro.php","",0,33,0);

        
Menu7=new Array("Supplemental","","",3,33,105);
        Menu7_1=new Array("Links","links.php","",0,33,110);
        Menu7_2=new Array("References","references.php","",0,33,0);
	    Menu7_3=new Array("Contact","contact.php","",0,33,0);